PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003282
Common NameRCOM_1000300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 335aa    MW: 38304.9 Da    PI: 4.8671
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003282genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.86.7e-131512535115
           GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                     l+ Ae vs+g++ +a++lL+   + +s++g+p+qR++ yf  AL++r+ ++  ++ +         + ++    + ++ +e  P+++ +hlt  +
  29889.m003282 151 FLASAEKVSNGKFDRASRLLEFCDQSSSNAGNPVQRVVYYFFGALRRRIDQELGKITSR--------SLVIIPNPSIQACFEGIPFYQAAHLTGIK 238
                    6788**********************************************933333221........22344444566778999************ PP

           GRAS 101 aIleavegeervHii 115
                    aI e v++++r H +
  29889.m003282 239 AIIENVAEANRSHLL 253
                    ***********9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.701121335IPR005202Transcription factor GRAS
PfamPF035142.3E-10151253IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MTKSRIFFFQ EFMHGMPSSL NKTSESMETG KRREELIIHG GDDYVLYHND SLLEGCIFSD  60
YPQQESYSDC RRFSDDPSFS IFSHLQFPPW PDQAAEIQNG IQDNYGNEFN RLNTERSIKP  120
SHSIPFTEVA GQGLSTEEIK RQNMWSLLNF FLASAEKVSN GKFDRASRLL EFCDQSSSNA  180
GNPVQRVVYY FFGALRRRID QELGKITSRS LVIIPNPSIQ ACFEGIPFYQ AAHLTGIKAI  240
IENVAEANRS HLLKITAVET TSKHLIEETE VKEDLIEIDT KEVVAVYSEY ALMNFIVLQD  300
QLGEGFRNTV ATEGEDRDIR NVKLDVWRNF FTQCG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316033.14e-52hypothetical protein POPTR_0010s15360g
TrEMBLB9RZP20.0B9RZP2_RICCO; Putative uncharacterized protein
STRINGPOPTR_0010s15360.11e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.16e-06GRAS family protein